Clinically actionable insights into endometriosis symptom trajectories using longitudinal self-reports, biological samples, and data from digital technologies

Precision Medicine Project - Clinically actionable insights into endometriosis symptom trajectories using longitudinal self-reports, biological samples, and data from digital technologies

Supervisor(s): Prof Thanasis Tsanas, Prof Andrew Horne & Prof Philippa Saunders
Centre/Institute: Usher Institute

Background

Endometriosis is a chronic condition associated with debilitating pain, fatigue, and heterogeneous symptom manifestation. It affects ~10% women of reproductive age, may take ~8 years to diagnose, and symptom progression typically relies on sparse clinical assessments. There is an urgent call for action to capitalize on recent biological and technical developments to improve diagnosis and symptom monitoring [1]. We have recently proposed developing a pioneering framework to transform endometriosis assessment capitalizing on digital technologies [2]. Standardised patient reported outcome measures (PROMs) where people living with endometriosis regularly self-report on their symptoms are increasingly used to monitor symptom severity progression. Over time, these can provide useful insights into patients’ own self perception of pain and diverse symptoms. Similarly, regularly collected biological samples may Page 9 of 14 offer insights into symptom trajectories over time. The proliferation of new digital health technologies, including wearable sensors, has been gaining increasing momentum [2]. The use of digital health technologies can provide additional continuous and passively collected data, which can be mined to obtain new insights complementing clinical reports, lab tests, and PROMs. We recently reported on the largest study of-its-kind endometriosis study, demonstrating how self-reports and wearable sensors can provide longitudinal insights into symptom trajectories and objective surgical intervention assessments [3]. Specifically, we have developed new signal processing and statistical machine learning algorithms towards assessing physical activity, sleep, and diurnal rhythm variability to process actigraphy data, and demonstrated how the extracted characteristics could complement and inform clinical assessments. Additionally, we have been developing information fusion and deep learning algorithms to mine multimodal data in other research applications [4], which could be deployed in the endometriosis project too. Building on projects that the supervisory team is involved (e.g. the £4m ADVANTAGE project and the £6m EUmetriosis project) this is an exciting time as we have collected (with further data collection ongoing) the largest longitudinal multimodal datasets in endometriosis.

Aims

The recruited student will further extend the algorithmic framework developed in the group to mine multimodal data (PROMs, lab-based results and clinical reports, data from wearables), to provide new clinically useful insights into endometriosis towards facilitating (a) longitudinal symptom monitoring, (b) objective intervention assessments, and (c) cohort stratification. The student will explore different datasets: (i) multimodal data from the ENDO1000, EUmetriosis and ADVANTAGE projects that the supervisory team are leading (collectively >500 people living with endometriosis), (ii) additional unique actigraphy datasets to facilitate algorithm development with external measures of ground truth (e.g. in terms of actigraphy and polysomnography data, >100 participants already collected). We envisage the large multimodal longitudinal datasets will enable patient stratification towards facilitating a more personalized treatment (precision medicine). The outputs of the analysis will be disseminated through our PPIE network (led by project supervisors Horne and Saunders), inform broader ongoing studies such as the EUmetriosis project, and potentially directly translated/embedded into NHS practice. The project is particularly suitable to students with interests in (multimodal) signal processing, time-series analysis and machine learning. At the end of this PhD project, the student will have a unique and transferable skillset in signal processing, mining multimodal data, and developing statistical machine learning methods, which is highly desirable in both academia and industry.

Training outcomes

  • Practical understanding of the problems at the interface of clinical practice and data analytics, including the language barrier with niche terminology on both ends
  • Developing expertise in actigraphy, time-series analysis, signal processing, information fusion, and statistical machine learning to tackle large-scale challenging problems
  • Programming skills: transforming algorithmic concepts to software tools, and developing interfaces which can be used by experts and non-experts to facilitate data analysis

References

  1. P.T.K. Saunders, A.W. Horne: Endometriosis: new insights and opportunities for relief of symptoms, Biology of Reproduction, (in press), https://doi.org/10.1093/biolre/ioaf164
  2. K. Edgley, A.W. Horne, P.T.K. Saunders, A. Tsanas: Symptom tracking in endometriosis using digital technologies: knowns, unknowns and future prospects, Cell Reports Medicine, Vol. 4(9), 101192, 2023
  3. K. Edgley, P.T.K. Saunders, L.H.R. Whitaker, A.W. Horne, A. Tsanas: Insights into endometriosis symptom trajectories and assessment of surgical intervention outcomes using longitudinal actigraphy, npj Digital Medicine, Vol. 8:236, 2025
  4. K. Woodward, E. Kanjo, A. Tsanas: Combining deep transfer learning with signal-image encoding for multi-modal mental wellbeing classification, ACM Transactions on Computing for Healthcare, Vol. 5(1):3, 2024 

Apply Now

Click here to Apply Now

  • The deadline for 26/27 applications is Monday 12th January 2026
  • Applicants must apply to a specific project. Please ensure you include details of the project on the Recruitment Form below, which you must submit to the research proposal section of your EUCLID application.
  • Please ensure you upload as many of the requested documents as possible, including a CV, at the time of submitting your EUCLID application.  
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Q&A Sessions

Supervisor(s) of each project will be holding a 30 minute Q&A session in the first two weeks of December. 

If you have any questions regarding this project, you are invited to attend the session on TBC via Microsoft Teams. Click here to join the session.