Systematic evidence-based approach to identifying and tailoring inflammation modulating treatments for patients with intracerebral haemorrhage

Precision Medicine Project - Systematic evidence-based approach to identifying and tailoring inflammation modulating treatments for patients with intracerebral haemorrhage

Supervisor(s): Dr Neshika Samarasekera, Prof Malcolm Macleod, Dr Charis Wong & Prof Tom Van Agtmael (University of Glasgow)
Centre/Institute: Centre for Clinical Brain Sciences

Background:

~40% patients die in the first month after intracerebral haemorrhage (ICH) and survival has not improved for >25 years.  The lack of treatments is partly due to incomplete understanding of causal mechanisms and the lengthy timelines and costs associated with drug development. While an expanding amount of research data are available to provide mechanistic insights, conventional evidence synthesis methods cannot handle their volume/complexity thus limiting their application.

Drug repurposing can accelerate the identification of effective treatments. The availability of safety data reduces drug development time and costs compared to de novo drug development. We developed systematic evidence-based approaches to guide drug repurposing in clinical trials of multiple sclerosis and MND.1 While keeping up with exponentially increasing publication rates is challenging, advances in automation and artificial intelligence (AI) techniques make it feasible2 and applying these techniques enables harnessing of data from different sources.  Systematic Online Living Evidence Summaries (SOLES)3 is a novel approach in evidence synthesis,  incorporating automation and AI to continuously gather, synthesise, summarise and report all evidence from a research domain, to inform drug repurposing.

Neuroinflammation occurs after ICH and is a therapeutic target. We have shown that interleukin-1β and neutrophils are abundant in ICH cases4 and that the inflammatory pathways involved vary according to the time after ICH onset (see page 8-9). Drugs which modulate the inflammatory response may improve outcome after ICH.

Mapping drugs identified by an ICH-SOLES to particular genes or pathways and combining this with information on the temporal evolution of inflammation after ICH and simple clinical features such as time since ICH onset and ICH location could allow doctors to target the right drug at the right patient, enabling development of precision medicine approaches personalised to patients with ICH.

This PhD will develop a framework to identify, evaluate, and prioritise repurposed inflammation-modulating drugs in ICH. We will match information on potential candidate drugs with clinical features, aiming to tailor drug selection to a given patient. 

Aim:

  1. To develop a systematic multimodal living evidence framework to identify inflammation-modulating repurposable drugs for ICH.
  2. To develop an interactive web platform to report living evidence summaries to inform drug prioritisation.
  3. To develop a systematic approach to the evaluation of candidate drugs for ICH.
  4. To test the most promising candidate drug(s) in an ICH mouse model. 

Methods

-Create a systematic online living evidence summary (SOLES) of inflammation modulating drugs tested in human and animal models.

-Integrate automated processes to continuously gather, synthesise and summarise all existing evidence from a research domain, and report the resulting content as interrogatable databases via interactive web applications.  We give further details on SOLES: see ‘computational analysis’ section page 9-10.

-Summarise the information for each drug and present the evidence to an expert panel for shortlisting. 

- We have a CSO funded feasibility study for a future ICH platform trial - PLINTH | The University of Edinburgh and this SOLES will enable drug selection for an ICH platform trial where a trial arm meeting predefined futility endpoints can be replaced with a new trial arm testing a different drug without interrupting study recruitment.

-Consider testing the most promising compound in a proof-of-concept intervention study using a mouse model of adult onset spontaneous ICH.

Training outcomes

  1. Systematic reviews, meta-analysis, critical appraisal
  2. R shiny programming software, statistics using R. 
  3. Bioinformatics including using publicly available databases and performing pathway and network analysis (EMBL-EBI Training)
  4. IAD training in ‘Interdisciplinary collaborations’ and ‘Interdisciplinary careers’
  5. Coding and data science The Carpentries at Edinburgh | Edinburgh Carpentries (edcarp.github.io) 
  6. Experience in in vivo mouse biology, intervention studies, molecular analysis of pre-clinical treatments

References

  1. Wong et al. 2023 doi:10.1136/bmjopen-2022-064169
  2. Bannach-Brown 2019 doi: 10.1186/s13643-019-0942-7
  3. Hair et al. 2023 doi: 10.1042/CS20220494
  4. Loan et al. 2022 doi: 10.1136/jnnp-2021-327098

Apply Now

Click here to Apply Now

  • The deadline for 25/26 applications is Monday 13th January 2025
  • Applicants must apply to a specific project. Please ensure you include details of the project on the Recruitment Form below, which you must submit to the research proposal section of your EUCLID application. 
  • Please ensure you upload as many of the requested documents as possible, including a CV, at the time of submitting your EUCLID application.  
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Q&A Sessions

Supervisor(s) of each project will be holding a 30 minute Q&A session in the first two weeks of December. 

If you have any questions regarding this project, you are invited to attend the session on Thursday 12th December at 10am GMT via Microsoft Teams. Click here (link to follow) to join the session.